3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13619

Details:

PFam ID : PF13619

PFam Domain Description : KTSC domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 199

Average sequence length: 59.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13619	B5RPP0_BORRA_12_76	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13619	B7X1T5_COMTE_24_89	100

Sequence based PCA Plot of the family - PF13619 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=8
Motif3 Start=53 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay