3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13618

Details:

PFam ID : PF13618

PFam Domain Description : Gluconate 2-dehydrogenase subunit 3

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 335

Average sequence length: 139.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13618	B3DW15_METI4_22_67	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13618	E8V0G5_TERSS_76_208	100

Sequence based PCA Plot of the family - PF13618 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=51 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay