3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13617

Details:

PFam ID : PF13617

PFam Domain Description : YnbE-like lipoprotein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 148

Average sequence length: 56.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13617	B3DW15_METI4_22_67	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13617	D6SNF3_9DELT_4_61	100

Sequence based PCA Plot of the family - PF13617 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay