3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13614

Details:

PFam ID : PF13614

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 676

Number of Sequence in Full Dataset : 2730

Average sequence length: 137.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13614	F1TH02_9CLOT_156_305	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13614	F0PZY7_BACT0_256_403	99.7

Sequence based PCA Plot of the family - PF13614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=153 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay