3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13613

Details:

PFam ID : PF13613

PFam Domain Description : DDE superfamily endonuclease

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 157

Average sequence length: 79.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13613	D3V035_XENBS_27_135	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13613	E0SUR8_STRZA_1_69	98.0

Sequence based PCA Plot of the family - PF13613 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay