3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13612

Details:

PFam ID : PF13612

PFam Domain Description : Transposase DDE domain

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 319

Average sequence length: 107.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13612	D3V035_XENBS_27_135	75.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13612	D4YCM6_BACTR_1_99	96.5

Sequence based PCA Plot of the family - PF13612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay