3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13610

Details:

PFam ID : PF13610

PFam Domain Description : DDE domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 692

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13610	Q7T5A6_9POTV_1114_1556	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13610	D3D6G1_9ACTO_3_99	99.4

Sequence based PCA Plot of the family - PF13610 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=65 Length=8
Motif3 Start=22 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay