3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13609

Details:

PFam ID : PF13609

PFam Domain Description : Gram-negative porin

Number of Sequence in 50% Dataset : 634

Number of Sequence in Full Dataset : 2053

Average sequence length: 320.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13609	Q7T5A6_9POTV_1114_1556	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13609	D0II79_9VIBR_1_202	96.0

Sequence based PCA Plot of the family - PF13609 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=126 Length=8
Motif3 Start=108 Length=8
Motif4 Start=360 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay