3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13606

Details:

PFam ID : PF13606

PFam Domain Description : Ankyrin repeat

Number of Sequence in 50% Dataset : 183

Number of Sequence in Full Dataset : 237

Average sequence length: 29.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13606	D7FSU4_ECTSI_139_167	36.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13606	B8NDN8_ASPFN_254_283	98.7

Sequence based PCA Plot of the family - PF13606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay