3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13605

Details:

PFam ID : PF13605

PFam Domain Description : Domain of unknown function (DUF4141)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 78

Average sequence length: 51.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13605	A6UMA4_SINMW_4_58	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13605	A6UMA4_SINMW_4_58	100

Sequence based PCA Plot of the family - PF13605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay