3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13604

Details:

PFam ID : PF13604

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 302

Number of Sequence in Full Dataset : 1624

Average sequence length: 190.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13604	B9XY95_HELPY_218_306	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13604	E0IUE2_9GAMM_245_414	100

Sequence based PCA Plot of the family - PF13604 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=219 Length=8
Motif2 Start=25 Length=8
Motif3 Start=162 Length=8
Motif4 Start=190 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay