3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13603

Details:

PFam ID : PF13603

PFam Domain Description : Leucyl-tRNA synthetase, Domain 2

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 1301

Average sequence length: 183.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13603	B9XY95_HELPY_218_306	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13603	D3BE62_POLPA_238_449	100

Sequence based PCA Plot of the family - PF13603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=128 Length=17
Motif2 Start=55 Length=23
Motif3 Start=152 Length=26
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay