3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13602

Details:

PFam ID : PF13602

PFam Domain Description : Zinc-binding dehydrogenase

Number of Sequence in 50% Dataset : 564

Number of Sequence in Full Dataset : 2112

Average sequence length: 130.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13602	E7GEP3_9FIRM_17_110	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13602	D2VBI0_NAEGR_226_369	100

Sequence based PCA Plot of the family - PF13602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=89 Length=8
Motif3 Start=112 Length=8
Motif4 Start=199 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay