3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13601

Details:

PFam ID : PF13601

PFam Domain Description : Winged helix DNA-binding domain

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 294

Average sequence length: 79.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13601	E7GEP3_9FIRM_17_110	45.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13601	E7GEP3_9FIRM_17_110	100

Sequence based PCA Plot of the family - PF13601 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=19
Motif2 Start=53 Length=11
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay