3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13600

Details:

PFam ID : PF13600

PFam Domain Description : N-terminal domain of unknown function (DUF4140)

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 217

Average sequence length: 103.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13600	B8H301_CAUCN_27_105	21.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13600	F2RVI8_TRITO_20_102	99.0

Sequence based PCA Plot of the family - PF13600 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay