3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13598

Details:

PFam ID : PF13598

PFam Domain Description : Domain of unknown function (DUF4139)

Number of Sequence in 50% Dataset : 234

Number of Sequence in Full Dataset : 419

Average sequence length: 250.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13598	D5BJ30_ZUNPS_1_46	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13598	C1CUZ2_DEIDV_210_432	100

Sequence based PCA Plot of the family - PF13598 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay