3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13597

Details:

PFam ID : PF13597

PFam Domain Description : Anaerobic ribonucleoside-triphosphate reductase

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 833

Average sequence length: 474.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13597	D5BJ30_ZUNPS_1_46	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13597	Q332F0_CBCP_601_974	100

Sequence based PCA Plot of the family - PF13597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=143 Length=8
Motif2 Start=49 Length=8
Motif3 Start=19 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay