3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13594

Details:

PFam ID : PF13594

PFam Domain Description : Amidohydrolase

Number of Sequence in 50% Dataset : 516

Number of Sequence in Full Dataset : 2067

Average sequence length: 76.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13594	Q8PZ72_METMA_101_162	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13594	Q2U8F5_ASPOR_74_205	100

Sequence based PCA Plot of the family - PF13594 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=70 Length=8
Motif3 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay