3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13592

Details:

PFam ID : PF13592

PFam Domain Description : Winged helix-turn helix

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 181

Average sequence length: 55.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13592	Q8PZ72_METMA_101_162	31.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13592	A7N4Q4_VIBHB_90_136	99.4

Sequence based PCA Plot of the family - PF13592 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay