3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13591

Details:

PFam ID : PF13591

PFam Domain Description : MerR HTH family regulatory protein

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 255

Average sequence length: 82.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13591	A6W0K7_MARMS_18_109	24.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13591	A6W0K7_MARMS_18_109	100

Sequence based PCA Plot of the family - PF13591 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay