3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13590

Details:

PFam ID : PF13590

PFam Domain Description : Domain of unknown function (DUF4136)

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 391

Average sequence length: 161.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13590	Q11U82_CYTH3_20_227	90.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13590	C6BZ54_DESAD_20_176	99.7

Sequence based PCA Plot of the family - PF13590 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=15 Length=17
Motif3 Start=170 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay