3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13589

Details:

PFam ID : PF13589

PFam Domain Description : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Number of Sequence in 50% Dataset : 360

Number of Sequence in Full Dataset : 3298

Average sequence length: 139.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13589	Q71MH1_9MYCO_1_86	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13589	A3X5U1_9RHOB_1_84	100

Sequence based PCA Plot of the family - PF13589 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=47 Length=8
Motif3 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay