3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13588

Details:

PFam ID : PF13588

PFam Domain Description : Type I restriction enzyme R protein N terminus (HSDR_N)

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 552

Average sequence length: 109.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13588	A7BR04_9GAMM_4_64	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13588	Q9PJS4_CHLMU_35_166	99.8

Sequence based PCA Plot of the family - PF13588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=8
Motif2 Start=52 Length=8
Motif3 Start=84 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay