3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13587

Details:

PFam ID : PF13587

PFam Domain Description : N-terminal domain of DJ-1_PfpI family

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 456

Average sequence length: 37.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13587	A2TUM1_9FLAO_25_59	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13587	A4C5E5_9GAMM_152_189	100

Sequence based PCA Plot of the family - PF13587 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay