3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13586

Details:

PFam ID : PF13586

PFam Domain Description : Transposase DDE domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 840

Average sequence length: 80.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13586	E4TW04_MARTH_817_927	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13586	D6YSN8_WADCW_74_166	99.2

Sequence based PCA Plot of the family - PF13586 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=57 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay