3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13585

Details:

PFam ID : PF13585

PFam Domain Description : C-terminal domain of CHU protein family

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 567

Average sequence length: 87.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13585	E4TW04_MARTH_817_927	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13585	E4TW04_MARTH_817_927	100

Sequence based PCA Plot of the family - PF13585 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=54 Length=8
Motif3 Start=23 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay