3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13584

Details:

PFam ID : PF13584

PFam Domain Description : Oxygen tolerance

Number of Sequence in 50% Dataset : 232

Number of Sequence in Full Dataset : 424

Average sequence length: 388.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13584	Q31JH7_THICR_62_351	92.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13584	Q6MJI6_BDEBA_13_565	100

Sequence based PCA Plot of the family - PF13584 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=102 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay