3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13583

Details:

PFam ID : PF13583

PFam Domain Description : Metallo-peptidase family M12B Reprolysin-like

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 130

Average sequence length: 156.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13583	A0ZD84_NODSP_345_448	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13583	D0MD22_RHOM4_225_460	100

Sequence based PCA Plot of the family - PF13583 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=46 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay