3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13581

Details:

PFam ID : PF13581

PFam Domain Description : Histidine kinase-like ATPase domain

Number of Sequence in 50% Dataset : 755

Number of Sequence in Full Dataset : 2756

Average sequence length: 121.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13581	Q75FY1_LEPIC_60_191	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13581	E4NEV8_KITSK_9_212	100

Sequence based PCA Plot of the family - PF13581 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=17
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay