3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13579

Details:

PFam ID : PF13579

PFam Domain Description : Glycosyl transferase 4-like domain

Number of Sequence in 50% Dataset : 2202

Number of Sequence in Full Dataset : 5224

Average sequence length: 167.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13579	D4AUD6_ARTBC_46_176	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13579	Q5FNK1_GLUOX_4_116	99.5

Sequence based PCA Plot of the family - PF13579 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=58 Length=8
Motif3 Start=118 Length=8
Motif4 Start=178 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay