3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13578

Details:

PFam ID : PF13578

PFam Domain Description : Methyltransferase domain

Number of Sequence in 50% Dataset : 303

Number of Sequence in Full Dataset : 751

Average sequence length: 113.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13578	D4AUD6_ARTBC_46_176	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13578	C6HXW4_9BACT_58_158	99.8

Sequence based PCA Plot of the family - PF13578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=93 Length=8
Motif2 Start=1 Length=17
Motif3 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay