3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13574

Details:

PFam ID : PF13574

PFam Domain Description : Metallo-peptidase family M12B Reprolysin-like

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 170

Average sequence length: 175.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13574	A6Q4U6_NITSB_240_381	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13574	B7Q897_IXOSC_189_384	100

Sequence based PCA Plot of the family - PF13574 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay