3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13570

Details:

PFam ID : PF13570

PFam Domain Description : YWTD domain

Number of Sequence in 50% Dataset : 486

Number of Sequence in Full Dataset : 1378

Average sequence length: 41.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13570	C6JK38_FUSVA_1205_1371	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13570	D2Z4U7_9BACT_73_112	99.7

Sequence based PCA Plot of the family - PF13570 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay