3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13569

Details:

PFam ID : PF13569

PFam Domain Description : Domain of unknown function (DUF4132)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 189

Average sequence length: 174.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13569	C6JK38_FUSVA_1205_1371	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13569	F2R211_9ACTO_35_231	100

Sequence based PCA Plot of the family - PF13569 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay