3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13568

Details:

PFam ID : PF13568

PFam Domain Description : Outer membrane protein beta-barrel domain

Number of Sequence in 50% Dataset : 457

Number of Sequence in Full Dataset : 798

Average sequence length: 181.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13568	C6Y452_PEDHD_181_383	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13568	Q11PB7_CYTH3_19_222	96.2

Sequence based PCA Plot of the family - PF13568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=196 Length=11
Motif3 Start=217 Length=8
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay