3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13567

Details:

PFam ID : PF13567

PFam Domain Description : Domain of unknown function (DUF4131)

Number of Sequence in 50% Dataset : 559

Number of Sequence in Full Dataset : 998

Average sequence length: 166.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13567	C9RKR9_FIBSS_29_211	77.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13567	Q48SQ9_STRPM_9_60	100

Sequence based PCA Plot of the family - PF13567 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=50 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay