3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13566

Details:

PFam ID : PF13566

PFam Domain Description : Domain of unknown function (DUF4130

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 278

Average sequence length: 162.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13566	E8WZH3_ACISM_184_290	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13566	C8PVB9_9GAMM_90_268	100

Sequence based PCA Plot of the family - PF13566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=11
Motif2 Start=86 Length=11
Motif3 Start=146 Length=8
Motif4 Start=169 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay