3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13564

Details:

PFam ID : PF13564

PFam Domain Description : DoxX-like family

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 578

Average sequence length: 102.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13564	A3TV15_9RHOB_9_111	17.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13564	C3XVR9_BRAFL_10_132	92.7

Sequence based PCA Plot of the family - PF13564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay