3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13560

Details:

PFam ID : PF13560

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 917

Number of Sequence in Full Dataset : 4786

Average sequence length: 66.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13560	F2BAR9_9NEIS_22_105	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13560	C7H7J0_9FIRM_84_125	99.8

Sequence based PCA Plot of the family - PF13560 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=44 Length=8
Motif3 Start=8 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay