3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13559

Details:

PFam ID : PF13559

PFam Domain Description : Domain of unknown function (DUF4129)

Number of Sequence in 50% Dataset : 238

Number of Sequence in Full Dataset : 538

Average sequence length: 72.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13559	C0CSM6_9FIRM_240_273	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13559	F0LJK5_THEBM_137_200	99.6

Sequence based PCA Plot of the family - PF13559 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=18
Motif3 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay