3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13554

Details:

PFam ID : PF13554

PFam Domain Description : Bacteriophage related domain of unknown function

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 64

Average sequence length: 119.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13554	B7KSV4_METC4_5_102	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13554	E7EKW9_9VIRU_5_138	100

Sequence based PCA Plot of the family - PF13554 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay