3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13553

Details:

PFam ID : PF13553

PFam Domain Description : Fijivirus P9-2 protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 37

Average sequence length: 212.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13553	B0V1H4_DANRE_610_852	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13553	Q0GKD3_MUSSP_813_1067	100

Sequence based PCA Plot of the family - PF13553 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=27
Motif2 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay