3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13551

Details:

PFam ID : PF13551

PFam Domain Description : Winged helix-turn helix

Number of Sequence in 50% Dataset : 365

Number of Sequence in Full Dataset : 1023

Average sequence length: 102.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13551	A1WQL4_VEREI_27_127	67.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13551	E0RMB1_PAEP6_9_78	99.9

Sequence based PCA Plot of the family - PF13551 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=28 Length=18
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay