3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13549

Details:

PFam ID : PF13549

PFam Domain Description : ATP-grasp domain

Number of Sequence in 50% Dataset : 180

Number of Sequence in Full Dataset : 878

Average sequence length: 215.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13549	E6JCE5_9ACTO_3_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13549	Q315X7_DESDG_18_290	100

Sequence based PCA Plot of the family - PF13549 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=265 Length=8
Motif2 Start=49 Length=8
Motif3 Start=63 Length=8
Motif4 Start=251 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay