3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13548

Details:

PFam ID : PF13548

PFam Domain Description : Domain of unknown function (DUF4126)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 176

Average sequence length: 171.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13548	E6JCE5_9ACTO_3_74	6.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13548	A6G1E1_9DELT_5_197	100

Sequence based PCA Plot of the family - PF13548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=8
Motif3 Start=65 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay