3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13547

Details:

PFam ID : PF13547

PFam Domain Description : GTA TIM-barrel-like domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 119

Average sequence length: 258.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13547	B5ZDC8_GLUDA_369_557	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13547	B6JDQ1_OLICO_417_699	100

Sequence based PCA Plot of the family - PF13547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=8
Motif2 Start=54 Length=32
Motif3 Start=187 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay