3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13546

Details:

PFam ID : PF13546

PFam Domain Description : DDE superfamily endonuclease

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 475

Average sequence length: 203.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13546	Q895E8_CLOTE_16_263	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13546	D1N6R0_9BACT_18_275	97.6

Sequence based PCA Plot of the family - PF13546 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=131 Length=8
Motif3 Start=31 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay