3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13545

Details:

PFam ID : PF13545

PFam Domain Description : Crp-like helix-turn-helix domain

Number of Sequence in 50% Dataset : 538

Number of Sequence in Full Dataset : 3072

Average sequence length: 71.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13545	D1VS24_9FIRM_12_78	50.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13545	E8U8M9_DEIML_124_238	100

Sequence based PCA Plot of the family - PF13545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=10 Length=11
Motif3 Start=1 Length=8
Motif4 Start=24 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay