3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13542

Details:

PFam ID : PF13542

PFam Domain Description : Helix-turn-helix domain of transposase family ISL3

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 611

Average sequence length: 63.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13542	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13542	Q01RA9_SOLUE_38_101	100

Sequence based PCA Plot of the family - PF13542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=28
Motif2 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay