3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13539

Details:

PFam ID : PF13539

PFam Domain Description : D-alanyl-D-alanine carboxypeptidase

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 376

Average sequence length: 73.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13539	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13539	E8WNQ9_GEOS8_380_487	100

Sequence based PCA Plot of the family - PF13539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay